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431 lines
12 KiB
Python
431 lines
12 KiB
Python
from collections import namedtuple
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import csv
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import re
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import textwrap
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from . import NOT_SET, strutil, fsutil
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EMPTY = '-'
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UNKNOWN = '???'
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def parse_markers(markers, default=None):
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if markers is NOT_SET:
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return default
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if not markers:
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return None
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if type(markers) is not str:
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return markers
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if markers == markers[0] * len(markers):
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return [markers]
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return list(markers)
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def fix_row(row, **markers):
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if isinstance(row, str):
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raise NotImplementedError(row)
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empty = parse_markers(markers.pop('empty', ('-',)))
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unknown = parse_markers(markers.pop('unknown', ('???',)))
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row = (val if val else None for val in row)
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if not empty:
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if unknown:
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row = (UNKNOWN if val in unknown else val for val in row)
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elif not unknown:
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row = (EMPTY if val in empty else val for val in row)
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else:
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row = (EMPTY if val in empty else (UNKNOWN if val in unknown else val)
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for val in row)
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return tuple(row)
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def _fix_read_default(row):
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for value in row:
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yield value.strip()
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def _fix_write_default(row, empty=''):
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for value in row:
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yield empty if value is None else str(value)
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def _normalize_fix_read(fix):
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if fix is None:
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fix = ''
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if callable(fix):
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def fix_row(row):
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values = fix(row)
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return _fix_read_default(values)
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elif isinstance(fix, str):
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def fix_row(row):
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values = _fix_read_default(row)
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return (None if v == fix else v
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for v in values)
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else:
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raise NotImplementedError(fix)
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return fix_row
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def _normalize_fix_write(fix, empty=''):
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if fix is None:
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fix = empty
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if callable(fix):
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def fix_row(row):
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values = fix(row)
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return _fix_write_default(values, empty)
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elif isinstance(fix, str):
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def fix_row(row):
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return _fix_write_default(row, fix)
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else:
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raise NotImplementedError(fix)
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return fix_row
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def read_table(infile, header, *,
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sep='\t',
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fix=None,
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_open=open,
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_get_reader=csv.reader,
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):
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"""Yield each row of the given ???-separated (e.g. tab) file."""
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if isinstance(infile, str):
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with _open(infile, newline='') as infile:
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yield from read_table(
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infile,
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header,
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sep=sep,
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fix=fix,
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_open=_open,
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_get_reader=_get_reader,
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)
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return
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lines = strutil._iter_significant_lines(infile)
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# Validate the header.
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if not isinstance(header, str):
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header = sep.join(header)
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try:
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actualheader = next(lines).strip()
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except StopIteration:
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actualheader = ''
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if actualheader != header:
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raise ValueError(f'bad header {actualheader!r}')
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fix_row = _normalize_fix_read(fix)
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for row in _get_reader(lines, delimiter=sep or '\t'):
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yield tuple(fix_row(row))
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def write_table(outfile, header, rows, *,
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sep='\t',
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fix=None,
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backup=True,
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_open=open,
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_get_writer=csv.writer,
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):
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"""Write each of the rows to the given ???-separated (e.g. tab) file."""
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if backup:
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fsutil.create_backup(outfile, backup)
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if isinstance(outfile, str):
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with _open(outfile, 'w', newline='') as outfile:
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return write_table(
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outfile,
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header,
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rows,
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sep=sep,
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fix=fix,
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backup=backup,
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_open=_open,
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_get_writer=_get_writer,
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)
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if isinstance(header, str):
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header = header.split(sep or '\t')
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fix_row = _normalize_fix_write(fix)
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writer = _get_writer(outfile, delimiter=sep or '\t')
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writer.writerow(header)
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for row in rows:
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writer.writerow(
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tuple(fix_row(row))
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)
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def parse_table(entries, sep, header=None, rawsep=None, *,
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default=NOT_SET,
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strict=True,
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):
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header, sep = _normalize_table_file_props(header, sep)
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if not sep:
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raise ValueError('missing "sep"')
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ncols = None
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if header:
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if strict:
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ncols = len(header.split(sep))
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cur_file = None
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for line, filename in strutil.parse_entries(entries, ignoresep=sep):
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_sep = sep
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if filename:
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if header and cur_file != filename:
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cur_file = filename
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# Skip the first line if it's the header.
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if line.strip() == header:
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continue
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else:
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# We expected the header.
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raise NotImplementedError((header, line))
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elif rawsep and sep not in line:
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_sep = rawsep
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row = _parse_row(line, _sep, ncols, default)
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if strict and not ncols:
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ncols = len(row)
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yield row, filename
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def parse_row(line, sep, *, ncols=None, default=NOT_SET):
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if not sep:
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raise ValueError('missing "sep"')
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return _parse_row(line, sep, ncols, default)
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def _parse_row(line, sep, ncols, default):
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row = tuple(v.strip() for v in line.split(sep))
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if (ncols or 0) > 0:
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diff = ncols - len(row)
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if diff:
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if default is NOT_SET or diff < 0:
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raise Exception(f'bad row (expected {ncols} columns, got {row!r})')
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row += (default,) * diff
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return row
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def _normalize_table_file_props(header, sep):
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if not header:
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return None, sep
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if not isinstance(header, str):
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if not sep:
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raise NotImplementedError(header)
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header = sep.join(header)
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elif not sep:
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for sep in ('\t', ',', ' '):
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if sep in header:
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break
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else:
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sep = None
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return header, sep
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##################################
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# stdout tables
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WIDTH = 20
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def resolve_columns(specs):
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if isinstance(specs, str):
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specs = specs.replace(',', ' ').strip().split()
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resolved = []
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for raw in specs:
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column = ColumnSpec.from_raw(raw)
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resolved.append(column)
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return resolved
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def build_table(specs, *, sep=' ', defaultwidth=None):
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columns = resolve_columns(specs)
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return _build_table(columns, sep=sep, defaultwidth=defaultwidth)
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class ColumnSpec(namedtuple('ColumnSpec', 'field label fmt')):
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REGEX = re.compile(textwrap.dedent(r'''
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^
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(?:
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\[
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(
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(?: [^\s\]] [^\]]* )?
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[^\s\]]
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) # <label>
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]
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)?
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( [-\w]+ ) # <field>
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(?:
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(?:
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:
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( [<^>] ) # <align>
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( \d+ )? # <width1>
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)
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(?:
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(?:
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:
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( \d+ ) # <width2>
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)?
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(?:
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:
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( .*? ) # <fmt>
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)?
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)
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)?
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$
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'''), re.VERBOSE)
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@classmethod
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def from_raw(cls, raw):
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if not raw:
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raise ValueError('missing column spec')
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elif isinstance(raw, cls):
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return raw
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if isinstance(raw, str):
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*values, _ = cls._parse(raw)
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else:
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*values, _ = cls._normalize(raw)
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if values is None:
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raise ValueError(f'unsupported column spec {raw!r}')
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return cls(*values)
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@classmethod
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def parse(cls, specstr):
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parsed = cls._parse(specstr)
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if not parsed:
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return None
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*values, _ = parsed
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return cls(*values)
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@classmethod
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def _parse(cls, specstr):
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m = cls.REGEX.match(specstr)
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if not m:
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return None
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(label, field,
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align, width1,
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width2, fmt,
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) = m.groups()
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if not label:
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label = field
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if fmt:
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assert not align and not width1, (specstr,)
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_parsed = _parse_fmt(fmt)
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if not _parsed:
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raise NotImplementedError
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elif width2:
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width, _ = _parsed
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if width != int(width2):
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raise NotImplementedError(specstr)
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elif width2:
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fmt = width2
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width = int(width2)
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else:
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assert not fmt, (fmt, specstr)
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if align:
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width = int(width1) if width1 else len(label)
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fmt = f'{align}{width}'
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else:
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width = None
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return field, label, fmt, width
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@classmethod
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def _normalize(cls, spec):
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if len(spec) == 1:
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raw, = spec
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raise NotImplementedError
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return _resolve_column(raw)
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if len(spec) == 4:
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label, field, width, fmt = spec
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if width:
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if not fmt:
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fmt = str(width)
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elif _parse_fmt(fmt)[0] != width:
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raise ValueError(f'width mismatch in {spec}')
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elif len(raw) == 3:
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label, field, fmt = spec
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if not field:
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label, field = None, label
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elif not isinstance(field, str) or not field.isidentifier():
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# XXX This doesn't seem right...
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fmt = f'{field}:{fmt}' if fmt else field
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label, field = None, label
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elif len(raw) == 2:
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label = None
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field, fmt = raw
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if not field:
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field, fmt = fmt, None
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elif not field.isidentifier() or fmt.isidentifier():
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label, field = field, fmt
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else:
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raise NotImplementedError
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fmt = f':{fmt}' if fmt else ''
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if label:
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return cls._parse(f'[{label}]{field}{fmt}')
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else:
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return cls._parse(f'{field}{fmt}')
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@property
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def width(self):
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if not self.fmt:
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return None
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parsed = _parse_fmt(self.fmt)
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if not parsed:
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return None
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width, _ = parsed
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return width
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def resolve_width(self, default=None):
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return _resolve_width(self.width, self.fmt, self.label, default)
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def _parse_fmt(fmt):
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if fmt.startswith(tuple('<^>')):
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align = fmt[0]
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width = fmt[1:]
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if width.isdigit():
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return int(width), align
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elif fmt.isdigit():
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return int(fmt), '<'
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return None
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def _resolve_width(width, fmt, label, default):
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if width:
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if not isinstance(width, int):
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raise NotImplementedError
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return width
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elif fmt:
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parsed = _parse_fmt(fmt)
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if parsed:
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width, _ = parsed
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if width:
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return width
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if not default:
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return WIDTH
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elif hasattr(default, 'get'):
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defaults = default
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default = defaults.get(None) or WIDTH
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return defaults.get(label) or default
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else:
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return default or WIDTH
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def _build_table(columns, *, sep=' ', defaultwidth=None):
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header = []
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div = []
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rowfmt = []
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for spec in columns:
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width = spec.resolve_width(defaultwidth)
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colfmt = spec.fmt
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colfmt = f':{spec.fmt}' if spec.fmt else f':{width}'
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header.append(f' {{:^{width}}} '.format(spec.label))
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div.append('-' * (width + 2))
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rowfmt.append(f' {{{spec.field}{colfmt}}} ')
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return (
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sep.join(header),
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sep.join(div),
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sep.join(rowfmt),
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)
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